Application Meta
jModeltest 2.1
(c) 2011-onwards D. Darriba, G.L. Taboada, R. Doallo and D. Posada,(1) Department of Biochemistry, Genetics and Immunology
University of Vigo, 36310 Vigo, Spain.
(2) Department of Electronics and Systems
University of A Coruna, 15071 A Coruna, Spain.
e-mail: ddarriba@udc.es, dposada@uvigo.es
Sun Jan 05 14:05:16 PST 2020
Linux 3.10.0-957.12.2.el7.x86_64, arch: amd64, bits: 64, numcores: 24
| Citation: | Darriba D, Taboada GL, Doallo R and Posada D. 2012. "jModelTest 2: more models, new heuristics and parallel computing". Nature Methods 9, 772. |
Back to top Settings
Arguments = -tr 24 --set-property log-dir=./ -d infile.phy -s 11 -f -i -g 4 -t ML -AIC -S BEST -p -a -wInput Alignment: "infile.phy"
NumTaxa = 383
Length = 1,382
Phyml version = 20130103
Phyml binary = PhyML_3.0_linux64
Candidate models = 88
number of substitution schemes = 11
including models with equal/unequal base frequencies (+F)
including models with/without a proportion of invariable sites (+I)
including models with/without rate variation among sites (+G) (nCat = 4)
Optimized free parameters (K) = Substitution parameters + 763 branch lengths + topology
Base tree for likelihood calculations = Maximum Likelihood
Tree topology search operation = Best of {NNI, SPR}
Model Optimization Results
| ID | Name | Partition | -lnL | p | fA | fC | fG | fT | ti/tv | R(a) | R(b) | R(c) | R(d) | R(e) | R(f) | p-inv | shape |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | JC | 000000 | 63514.5239 | 764 | - | - | - | - | - | - | - | - | - | - | - | - | - |
| 2 | JC+I | 000000 | 61717.3110 | 765 | - | - | - | - | - | - | - | - | - | - | - | 0.1690 | - |
| 3 | JC+G | 000000 | 58331.7679 | 765 | - | - | - | - | - | - | - | - | - | - | - | - | 0.6410 |
| 4 | JC+I+G | 000000 | 58290.6876 | 766 | - | - | - | - | - | - | - | - | - | - | - | 0.1180 | 0.8780 |
| 5 | F81 | 000000 | 63444.6157 | 767 | 0.2364 | 0.2725 | 0.2154 | 0.2757 | - | - | - | - | - | - | - | - | - |
| 6 | F81+I | 000000 | 61621.3494 | 768 | 0.2313 | 0.2788 | 0.2114 | 0.2785 | - | - | - | - | - | - | - | 0.1690 | - |
| 7 | F81+G | 000000 | 58205.3078 | 768 | 0.2227 | 0.2816 | 0.2084 | 0.2873 | - | - | - | - | - | - | - | - | 0.6380 |
| 8 | F81+I+G | 000000 | 58161.8459 | 769 | 0.2210 | 0.2819 | 0.2084 | 0.2887 | - | - | - | - | - | - | - | 0.1190 | 0.8750 |
| 9 | K80 | 010010 | 60184.9661 | 765 | - | - | - | - | 2.4767 | - | - | - | - | - | - | - | - |
| 10 | K80+I | 010010 | 58327.4127 | 766 | - | - | - | - | 2.5542 | - | - | - | - | - | - | 0.1690 | - |
| 11 | K80+G | 010010 | 54751.9912 | 766 | - | - | - | - | 2.9162 | - | - | - | - | - | - | - | 0.6020 |
| 12 | K80+I+G | 010010 | 54709.2741 | 767 | - | - | - | - | 2.9204 | - | - | - | - | - | - | 0.1200 | 0.8310 |
| 13 | HKY | 010010 | 60126.0413 | 768 | 0.2298 | 0.2698 | 0.2232 | 0.2772 | 2.5160 | - | - | - | - | - | - | - | - |
| 14 | HKY+I | 010010 | 58295.0934 | 769 | 0.2327 | 0.2682 | 0.2304 | 0.2688 | 2.5567 | - | - | - | - | - | - | 0.1690 | - |
| 15 | HKY+G | 010010 | 54729.8777 | 769 | 0.2295 | 0.2605 | 0.2389 | 0.2712 | 2.9046 | - | - | - | - | - | - | - | 0.6050 |
| 16 | HKY+I+G | 010010 | 54681.0749 | 770 | 0.2272 | 0.2594 | 0.2413 | 0.2722 | 2.9142 | - | - | - | - | - | - | 0.1200 | 0.8280 |
| 17 | TrNef | 010020 | 60091.3522 | 766 | - | - | - | - | - | 1.0000 | 4.1666 | 1.0000 | 1.0000 | 5.7266 | 1.0000 | - | - |
| 18 | TrNef+I | 010020 | 58290.9223 | 767 | - | - | - | - | - | 1.0000 | 4.5770 | 1.0000 | 1.0000 | 5.5843 | 1.0000 | 0.1690 | - |
| 19 | TrNef+G | 010020 | 54731.9025 | 767 | - | - | - | - | - | 1.0000 | 5.3573 | 1.0000 | 1.0000 | 6.2739 | 1.0000 | - | 0.6060 |
| 20 | TrNef+I+G | 010020 | 54693.9431 | 768 | - | - | - | - | - | 1.0000 | 5.2981 | 1.0000 | 1.0000 | 6.3103 | 1.0000 | 0.1210 | 0.8370 |
| 21 | TrN | 010020 | 60085.4473 | 769 | 0.2572 | 0.2439 | 0.2477 | 0.2512 | - | 1.0000 | 4.1195 | 1.0000 | 1.0000 | 5.8034 | 1.0000 | - | - |
| 22 | TrN+I | 010020 | 58287.7823 | 770 | 0.2430 | 0.2585 | 0.2395 | 0.2591 | - | 1.0000 | 4.7277 | 1.0000 | 1.0000 | 5.3784 | 1.0000 | 0.1690 | - |
| 23 | TrN+G | 010020 | 54727.1627 | 770 | 0.2270 | 0.2627 | 0.2368 | 0.2736 | - | 1.0000 | 5.8890 | 1.0000 | 1.0000 | 5.6593 | 1.0000 | - | 0.6060 |
| 24 | TrN+I+G | 010020 | 54680.1921 | 771 | 0.2249 | 0.2615 | 0.2393 | 0.2743 | - | 1.0000 | 5.8973 | 1.0000 | 1.0000 | 5.6819 | 1.0000 | 0.1200 | 0.8280 |
| 25 | TPM1 | 012210 | 60181.6769 | 766 | - | - | - | - | - | 1.0000 | 5.2399 | 1.1188 | 1.1188 | 5.2399 | 1.0000 | - | - |
| 26 | TPM1+I | 012210 | 58323.4294 | 767 | - | - | - | - | - | 1.0000 | 5.4333 | 1.1267 | 1.1267 | 5.4333 | 1.0000 | 0.1690 | - |
| 27 | TPM1+G | 012210 | 54744.6229 | 767 | - | - | - | - | - | 1.0000 | 6.2737 | 1.1451 | 1.1451 | 6.2737 | 1.0000 | - | 0.6040 |
| 28 | TPM1+I+G | 012210 | 54705.6954 | 768 | - | - | - | - | - | 1.0000 | 6.2555 | 1.1418 | 1.1418 | 6.2555 | 1.0000 | 0.1200 | 0.8310 |
| 29 | TPM1uf | 012210 | 60121.9592 | 769 | 0.2298 | 0.2694 | 0.2232 | 0.2776 | - | 1.0000 | 5.2501 | 1.1235 | 1.1235 | 5.2501 | 1.0000 | - | - |
| 30 | TPM1uf+I | 012210 | 58290.0755 | 770 | 0.2328 | 0.2676 | 0.2303 | 0.2694 | - | 1.0000 | 5.3782 | 1.1288 | 1.1288 | 5.3782 | 1.0000 | 0.1690 | - |
| 31 | TPM1uf+G | 012210 | 54725.4826 | 770 | 0.2294 | 0.2601 | 0.2390 | 0.2716 | - | 1.0000 | 6.1934 | 1.1491 | 1.1491 | 6.1934 | 1.0000 | - | 0.6060 |
| 32 | TPM1uf+I+G | 012210 | 54677.0807 | 771 | 0.2271 | 0.2588 | 0.2414 | 0.2727 | - | 1.0000 | 6.2169 | 1.1496 | 1.1496 | 6.2169 | 1.0000 | 0.1200 | 0.8290 |
| 33 | TPM2 | 010212 | 60182.6328 | 766 | - | - | - | - | - | 0.8989 | 4.7060 | 0.8989 | 1.0000 | 4.7060 | 1.0000 | - | - |
| 34 | TPM2+I | 010212 | 58323.7207 | 767 | - | - | - | - | - | 0.9007 | 4.8669 | 0.9007 | 1.0000 | 4.8669 | 1.0000 | 0.1690 | - |
| 35 | TPM2+G | 010212 | 54745.4575 | 767 | - | - | - | - | - | 0.9135 | 5.6111 | 0.9135 | 1.0000 | 5.6111 | 1.0000 | - | 0.6030 |
| 36 | TPM2+I+G | 010212 | 54706.8459 | 768 | - | - | - | - | - | 0.9272 | 5.6398 | 0.9272 | 1.0000 | 5.6398 | 1.0000 | 0.1200 | 0.8280 |
| 37 | TPM2uf | 010212 | 60120.6159 | 769 | 0.2338 | 0.2696 | 0.2195 | 0.2771 | - | 0.8763 | 4.6445 | 0.8763 | 1.0000 | 4.6445 | 1.0000 | - | - |
| 38 | TPM2uf+I | 010212 | 58289.9389 | 770 | 0.2365 | 0.2679 | 0.2269 | 0.2687 | - | 0.8883 | 4.7808 | 0.8883 | 1.0000 | 4.7808 | 1.0000 | 0.1690 | - |
| 39 | TPM2uf+G | 010212 | 54726.7532 | 770 | 0.2317 | 0.2603 | 0.2369 | 0.2711 | - | 0.9464 | 5.6144 | 0.9464 | 1.0000 | 5.6144 | 1.0000 | - | 0.6050 |
| 40 | TPM2uf+I+G | 010212 | 54681.0301 | 771 | 0.2280 | 0.2594 | 0.2404 | 0.2722 | - | 0.9812 | 5.7329 | 0.9812 | 1.0000 | 5.7329 | 1.0000 | 0.1200 | 0.8270 |
| 41 | TPM3 | 012012 | 60183.4189 | 766 | - | - | - | - | - | 1.0991 | 5.1968 | 1.0000 | 1.0991 | 5.1968 | 1.0000 | - | - |
| 42 | TPM3+I | 012012 | 58325.5156 | 767 | - | - | - | - | - | 1.0776 | 5.3071 | 1.0000 | 1.0776 | 5.3071 | 1.0000 | 0.1690 | - |
| 43 | TPM3+G | 012012 | 54743.2877 | 767 | - | - | - | - | - | 1.1564 | 6.3002 | 1.0000 | 1.1564 | 6.3002 | 1.0000 | - | 0.6050 |
| 44 | TPM3+I+G | 012012 | 54701.8754 | 768 | - | - | - | - | - | 1.1626 | 6.3087 | 1.0000 | 1.1626 | 6.3087 | 1.0000 | 0.1200 | 0.8300 |
| 45 | TPM3uf | 012012 | 60121.0716 | 769 | 0.2298 | 0.2653 | 0.2231 | 0.2819 | - | 1.1400 | 5.2833 | 1.0000 | 1.1400 | 5.2833 | 1.0000 | - | - |
| 46 | TPM3uf+I | 012012 | 58291.8448 | 770 | 0.2327 | 0.2654 | 0.2302 | 0.2717 | - | 1.0934 | 5.2871 | 1.0000 | 1.0934 | 5.2871 | 1.0000 | 0.1690 | - |
| 47 | TPM3uf+G | 012012 | 54719.7240 | 770 | 0.2291 | 0.2523 | 0.2389 | 0.2798 | - | 1.2526 | 6.4670 | 1.0000 | 1.2526 | 6.4670 | 1.0000 | - | 0.6090 |
| 48 | TPM3uf+I+G | 012012 | 54667.2466 | 771 | 0.2272 | 0.2496 | 0.2410 | 0.2823 | - | 1.2901 | 6.5852 | 1.0000 | 1.2901 | 6.5852 | 1.0000 | 0.1200 | 0.8290 |
| 49 | TIM1ef | 012230 | 60086.5332 | 767 | - | - | - | - | - | 1.0000 | 4.4283 | 1.1240 | 1.1240 | 6.0870 | 1.0000 | - | - |
| 50 | TIM1ef+I | 012230 | 58288.0698 | 768 | - | - | - | - | - | 1.0000 | 4.8692 | 1.1287 | 1.1287 | 5.9462 | 1.0000 | 0.1690 | - |
| 51 | TIM1ef+G | 012230 | 54727.8087 | 768 | - | - | - | - | - | 1.0000 | 5.7374 | 1.1427 | 1.1427 | 6.7195 | 1.0000 | - | 0.6060 |
| 52 | TIM1ef+I+G | 012230 | 54690.6822 | 769 | - | - | - | - | - | 1.0000 | 5.6726 | 1.1422 | 1.1422 | 6.7551 | 1.0000 | 0.1210 | 0.8370 |
| 53 | TIM1 | 012230 | 60080.1545 | 770 | 0.2570 | 0.2438 | 0.2477 | 0.2516 | - | 1.0000 | 4.3826 | 1.1234 | 1.1234 | 6.1548 | 1.0000 | - | - |
| 54 | TIM1+I | 012230 | 58284.9451 | 771 | 0.2428 | 0.2581 | 0.2396 | 0.2595 | - | 1.0000 | 5.0325 | 1.1291 | 1.1291 | 5.7278 | 1.0000 | 0.1690 | - |
| 55 | TIM1+G | 012230 | 54722.3836 | 771 | 0.2270 | 0.2624 | 0.2367 | 0.2739 | - | 1.0000 | 6.3134 | 1.1453 | 1.1453 | 6.0628 | 1.0000 | - | 0.6050 |
| 56 | TIM1+I+G | 012230 | 54676.1237 | 772 | 0.2242 | 0.2611 | 0.2393 | 0.2754 | - | 1.0000 | 6.3679 | 1.1528 | 1.1528 | 6.1028 | 1.0000 | 0.1200 | 0.8300 |
| 57 | TIM2ef | 010232 | 60086.6466 | 767 | - | - | - | - | - | 0.9007 | 3.9718 | 0.9007 | 1.0000 | 5.4593 | 1.0000 | - | - |
| 58 | TIM2ef+I | 010232 | 58288.4129 | 768 | - | - | - | - | - | 0.9006 | 4.3577 | 0.9006 | 1.0000 | 5.3214 | 1.0000 | 0.1690 | - |
| 59 | TIM2ef+G | 010232 | 54732.2772 | 768 | - | - | - | - | - | 0.9150 | 5.1355 | 0.9150 | 1.0000 | 6.0199 | 1.0000 | - | 0.6060 |
| 60 | TIM2ef+I+G | 010232 | 54693.2192 | 769 | - | - | - | - | - | 0.9276 | 5.1126 | 0.9276 | 1.0000 | 6.0894 | 1.0000 | 0.1200 | 0.8350 |
| 61 | TIM2 | 010232 | 60076.5324 | 770 | 0.2640 | 0.2431 | 0.2425 | 0.2504 | - | 0.8522 | 3.8051 | 0.8522 | 1.0000 | 5.3963 | 1.0000 | - | - |
| 62 | TIM2+I | 010232 | 58284.5077 | 771 | 0.2479 | 0.2576 | 0.2360 | 0.2584 | - | 0.8784 | 4.4262 | 0.8784 | 1.0000 | 5.0800 | 1.0000 | 0.1690 | - |
| 63 | TIM2+G | 010232 | 54728.8160 | 771 | 0.2297 | 0.2624 | 0.2351 | 0.2728 | - | 0.9459 | 5.7028 | 0.9459 | 1.0000 | 5.5310 | 1.0000 | - | 0.6040 |
| 64 | TIM2+I+G | 010232 | 54680.8380 | 772 | 0.2252 | 0.2616 | 0.2388 | 0.2745 | - | 0.9891 | 5.8691 | 0.9891 | 1.0000 | 5.6489 | 1.0000 | 0.1200 | 0.8280 |
| 65 | TIM3ef | 012032 | 60087.5183 | 767 | - | - | - | - | - | 1.1011 | 4.3781 | 1.0000 | 1.1011 | 6.0196 | 1.0000 | - | - |
| 66 | TIM3ef+I | 012032 | 58290.2556 | 768 | - | - | - | - | - | 1.0789 | 4.7556 | 1.0000 | 1.0789 | 5.8060 | 1.0000 | 0.1690 | - |
| 67 | TIM3ef+G | 012032 | 54729.9199 | 768 | - | - | - | - | - | 1.1576 | 5.7650 | 1.0000 | 1.1576 | 6.7494 | 1.0000 | - | 0.6070 |
| 68 | TIM3ef+I+G | 012032 | 54689.0569 | 769 | - | - | - | - | - | 1.1616 | 5.7148 | 1.0000 | 1.1616 | 6.8070 | 1.0000 | 0.1210 | 0.8360 |
| 69 | TIM3 | 012032 | 60079.1970 | 770 | 0.2571 | 0.2405 | 0.2475 | 0.2549 | - | 1.1395 | 4.4094 | 1.0000 | 1.1395 | 6.1942 | 1.0000 | - | - |
| 70 | TIM3+I | 012032 | 58286.7774 | 771 | 0.2428 | 0.2561 | 0.2396 | 0.2615 | - | 1.0918 | 4.9422 | 1.0000 | 1.0918 | 5.6261 | 1.0000 | 0.1690 | - |
| 71 | TIM3+G | 012032 | 54717.0413 | 771 | 0.2271 | 0.2543 | 0.2368 | 0.2818 | - | 1.2492 | 6.5727 | 1.0000 | 1.2492 | 6.3457 | 1.0000 | - | 0.6080 |
| 72 | TIM3+I+G | 012032 | 54668.1007 | 772 | 0.2244 | 0.2519 | 0.2386 | 0.2851 | - | 1.2914 | 6.7340 | 1.0000 | 1.2914 | 6.4481 | 1.0000 | 0.1200 | 0.8290 |
| 73 | TVMef | 012314 | 60176.9305 | 768 | - | - | - | - | - | 0.9823 | 5.2045 | 1.0082 | 1.2115 | 5.2045 | 1.0000 | - | - |
| 74 | TVMef+I | 012314 | 58318.3679 | 769 | - | - | - | - | - | 0.9629 | 5.3327 | 1.0110 | 1.1915 | 5.3327 | 1.0000 | 0.1690 | - |
| 75 | TVMef+G | 012314 | 54737.6815 | 769 | - | - | - | - | - | 1.0481 | 6.4059 | 1.0418 | 1.2868 | 6.4059 | 1.0000 | - | 0.6040 |
| 76 | TVMef+I+G | 012314 | 54697.6998 | 770 | - | - | - | - | - | 1.0718 | 6.4568 | 1.0518 | 1.2953 | 6.4568 | 1.0000 | 0.1200 | 0.8300 |
| 77 | TVM | 012314 | 60114.1525 | 771 | 0.2334 | 0.2651 | 0.2195 | 0.2820 | - | 0.9935 | 5.2425 | 0.9868 | 1.2591 | 5.2425 | 1.0000 | - | - |
| 78 | TVM+I | 012314 | 58283.8420 | 772 | 0.2365 | 0.2653 | 0.2268 | 0.2714 | - | 0.9621 | 5.2795 | 0.9999 | 1.2096 | 5.2795 | 1.0000 | 0.1690 | - |
| 79 | TVM+G | 012314 | 54709.0179 | 772 | 0.2310 | 0.2515 | 0.2365 | 0.2810 | - | 1.1892 | 6.7563 | 1.0794 | 1.4213 | 6.7563 | 1.0000 | - | 0.6100 |
| 80 | TVM+I+G | 012314 | 54664.1307 | 773 | 0.2282 | 0.2495 | 0.2400 | 0.2824 | - | 1.2610 | 6.9388 | 1.1157 | 1.4474 | 6.9388 | 1.0000 | 0.1200 | 0.8280 |
| 81 | SYM | 012345 | 60080.8800 | 769 | - | - | - | - | - | 0.9838 | 4.3992 | 1.0095 | 1.2173 | 6.0633 | 1.0000 | - | - |
| 82 | SYM+I | 012345 | 58282.9166 | 770 | - | - | - | - | - | 0.9642 | 4.7824 | 1.0130 | 1.1949 | 5.8410 | 1.0000 | 0.1690 | - |
| 83 | SYM+G | 012345 | 54723.6545 | 770 | - | - | - | - | - | 1.0541 | 5.8830 | 1.0418 | 1.2969 | 6.9043 | 1.0000 | - | 0.6080 |
| 84 | SYM+I+G | 012345 | 54684.4868 | 771 | - | - | - | - | - | 1.0690 | 5.8459 | 1.0498 | 1.2928 | 6.9600 | 1.0000 | 0.1200 | 0.8340 |
| 85 | GTR | 012345 | 60068.1020 | 772 | 0.2643 | 0.2392 | 0.2426 | 0.2538 | - | 0.9624 | 4.2728 | 0.9539 | 1.2543 | 6.0773 | 1.0000 | - | - |
| 86 | GTR+I | 012345 | 58273.9769 | 773 | 0.2483 | 0.2548 | 0.2359 | 0.2610 | - | 0.9504 | 4.8839 | 0.9878 | 1.2119 | 5.6194 | 1.0000 | 0.1690 | - |
| 87 | GTR+G | 012345 | 54713.0974 | 773 | 0.2301 | 0.2530 | 0.2356 | 0.2812 | - | 1.1820 | 6.7823 | 1.0841 | 1.4095 | 6.6588 | 1.0000 | - | 0.6080 |
| 88 | GTR+I+G | 012345 | 54665.1162 | 774 | 0.2259 | 0.2513 | 0.2385 | 0.2844 | - | 1.2675 | 7.0674 | 1.1205 | 1.4463 | 6.8406 | 1.0000 | 0.1200 | 0.8280 |
There are 81 different topologies. The following table shows the models supporting each topology and the rank according to each Information Criterion, as well as Robinson-Foulds and Euclidean distances with the tree of the best-fit model.
| ID | Models | Topology | AIC | BIC | AICc | DT | |
|---|---|---|---|---|---|---|---|
| 0 |
TVM+I+G
|
RANK | 0 | - | - | - | |
| Weight | 0.6595 | - | - | - | |||
| RF | 0 | - | - | - | |||
| AVG Distance | 0.0000e+00 | - | - | - | |||
| Distance VAR | 0.0000e+00 | - | - | - | |||
| 1 |
GTR+I+G
|
RANK | 1 | - | - | - | |
| Weight | 0.0906 | - | - | - | |||
| RF | 12 | - | - | - | |||
| AVG Distance | 7.4885e-01 | - | - | - | |||
| Distance VAR | 0.0000e+00 | - | - | - | |||
| 2 |
TrN+I+G
|
RANK | 2 | - | - | - | |
| Weight | 0.0000 | - | - | - | |||
| RF | 14 | - | - | - | |||
| AVG Distance | 1.0579e+00 | - | - | - | |||
| Distance VAR | 0.0000e+00 | - | - | - | |||
| 3 |
TPM1uf+I+G
|
RANK | 3 | - | - | - | |
| Weight | 0.0000 | - | - | - | |||
| RF | 16 | - | - | - | |||
| AVG Distance | 3.9921e-01 | - | - | - | |||
| Distance VAR | 0.0000e+00 | - | - | - | |||
| 4 |
TPM3uf+I+G
|
RANK | 4 | - | - | - | |
| Weight | 0.2161 | - | - | - | |||
| RF | 16 | - | - | - | |||
| AVG Distance | 1.0582e+00 | - | - | - | |||
| Distance VAR | 0.0000e+00 | - | - | - | |||
| 5 |
TIM2+I+G
|
RANK | 5 | - | - | - | |
| Weight | 0.0000 | - | - | - | |||
| RF | 18 | - | - | - | |||
| AVG Distance | 7.3908e-01 | - | - | - | |||
| Distance VAR | 0.0000e+00 | - | - | - | |||
| 6 |
TIM3+I+G
|
RANK | 6 | - | - | - | |
| Weight | 0.0338 | - | - | - | |||
| RF | 18 | - | - | - | |||
| AVG Distance | 4.6822e-01 | - | - | - | |||
| Distance VAR | 0.0000e+00 | - | - | - | |||
| 7 |
TPM2uf+I+G
|
RANK | 7 | - | - | - | |
| Weight | 0.0000 | - | - | - | |||
| RF | 20 | - | - | - | |||
| AVG Distance | 1.0332e+00 | - | - | - | |||
| Distance VAR | 0.0000e+00 | - | - | - | |||
| 8 |
TIM1+I+G
|
RANK | 8 | - | - | - | |
| Weight | 0.0000 | - | - | - | |||
| RF | 26 | - | - | - | |||
| AVG Distance | 7.4808e-01 | - | - | - | |||
| Distance VAR | 0.0000e+00 | - | - | - | |||
| 9 |
HKY+I+G
|
RANK | 9 | - | - | - | |
| Weight | 0.0000 | - | - | - | |||
| RF | 30 | - | - | - | |||
| AVG Distance | 1.0368e+00 | - | - | - | |||
| Distance VAR | 0.0000e+00 | - | - | - | |||
| 10 |
TVMef+I+G
|
RANK | 10 | - | - | - | |
| Weight | 0.0000 | - | - | - | |||
| RF | 42 | - | - | - | |||
| AVG Distance | 1.2622e+00 | - | - | - | |||
| Distance VAR | 0.0000e+00 | - | - | - | |||
| 11 |
TPM3+I+G
|
RANK | 11 | - | - | - | |
| Weight | 0.0000 | - | - | - | |||
| RF | 44 | - | - | - | |||
| AVG Distance | 4.1399e+00 | - | - | - | |||
| Distance VAR | 0.0000e+00 | - | - | - | |||
| 12 |
TrNef+I+G
|
RANK | 12 | - | - | - | |
| Weight | 0.0000 | - | - | - | |||
| RF | 46 | - | - | - | |||
| AVG Distance | 4.1877e+00 | - | - | - | |||
| Distance VAR | 0.0000e+00 | - | - | - | |||
| 13 |
TPM2+I+G
|
RANK | 13 | - | - | - | |
| Weight | 0.0000 | - | - | - | |||
| RF | 46 | - | - | - | |||
| AVG Distance | 4.1532e+00 | - | - | - | |||
| Distance VAR | 0.0000e+00 | - | - | - | |||
| 14 |
TIM1ef+I+G
|
RANK | 14 | - | - | - | |
| Weight | 0.0000 | - | - | - | |||
| RF | 46 | - | - | - | |||
| AVG Distance | 4.1285e+00 | - | - | - | |||
| Distance VAR | 0.0000e+00 | - | - | - | |||
| 15 |
TIM2ef+I+G
|
RANK | 15 | - | - | - | |
| Weight | 0.0000 | - | - | - | |||
| RF | 46 | - | - | - | |||
| AVG Distance | 4.1378e+00 | - | - | - | |||
| Distance VAR | 0.0000e+00 | - | - | - | |||
| 16 |
TIM3ef+I+G
|
RANK | 16 | - | - | - | |
| Weight | 0.0000 | - | - | - | |||
| RF | 46 | - | - | - | |||
| AVG Distance | 4.1618e+00 | - | - | - | |||
| Distance VAR | 0.0000e+00 | - | - | - | |||
| 17 |
SYM+I+G
|
RANK | 17 | - | - | - | |
| Weight | 0.0000 | - | - | - | |||
| RF | 48 | - | - | - | |||
| AVG Distance | 4.1873e+00 | - | - | - | |||
| Distance VAR | 0.0000e+00 | - | - | - | |||
| 18 |
TPM1+I+G
|
RANK | 18 | - | - | - | |
| Weight | 0.0000 | - | - | - | |||
| RF | 50 | - | - | - | |||
| AVG Distance | 4.1431e+00 | - | - | - | |||
| Distance VAR | 0.0000e+00 | - | - | - | |||
| 19 |
TVM+G
|
RANK | 19 | - | - | - | |
| Weight | 0.0000 | - | - | - | |||
| RF | 52 | - | - | - | |||
| AVG Distance | 1.1498e+00 | - | - | - | |||
| Distance VAR | 0.0000e+00 | - | - | - | |||
| 20 |
K80+I+G
|
RANK | 20 | - | - | - | |
| Weight | 0.0000 | - | - | - | |||
| RF | 56 | - | - | - | |||
| AVG Distance | 4.1366e+00 | - | - | - | |||
| Distance VAR | 0.0000e+00 | - | - | - | |||
| 21 |
TIM2ef+G
|
RANK | 21 | - | - | - | |
| Weight | 0.0000 | - | - | - | |||
| RF | 60 | - | - | - | |||
| AVG Distance | 1.1233e+00 | - | - | - | |||
| Distance VAR | 0.0000e+00 | - | - | - | |||
| 22 |
SYM+G
|
RANK | 22 | - | - | - | |
| Weight | 0.0000 | - | - | - | |||
| RF | 60 | - | - | - | |||
| AVG Distance | 1.0782e+00 | - | - | - | |||
| Distance VAR | 0.0000e+00 | - | - | - | |||
| 23 |
TIM1ef+G
|
RANK | 23 | - | - | - | |
| Weight | 0.0000 | - | - | - | |||
| RF | 66 | - | - | - | |||
| AVG Distance | 1.2167e+00 | - | - | - | |||
| Distance VAR | 0.0000e+00 | - | - | - | |||
| 24 |
TIM3ef+G
|
RANK | 24 | - | - | - | |
| Weight | 0.0000 | - | - | - | |||
| RF | 66 | - | - | - | |||
| AVG Distance | 1.3668e+00 | - | - | - | |||
| Distance VAR | 0.0000e+00 | - | - | - | |||
| 25 |
TrNef+G
|
RANK | 25 | - | - | - | |
| Weight | 0.0000 | - | - | - | |||
| RF | 68 | - | - | - | |||
| AVG Distance | 1.2434e+00 | - | - | - | |||
| Distance VAR | 0.0000e+00 | - | - | - | |||
| 26 |
GTR+G
|
RANK | 26 | - | - | - | |
| Weight | 0.0000 | - | - | - | |||
| RF | 68 | - | - | - | |||
| AVG Distance | 1.1385e+00 | - | - | - | |||
| Distance VAR | 0.0000e+00 | - | - | - | |||
| 27 |
TPM2+G
|
RANK | 27 | - | - | - | |
| Weight | 0.0000 | - | - | - | |||
| RF | 70 | - | - | - | |||
| AVG Distance | 1.1289e+00 | - | - | - | |||
| Distance VAR | 0.0000e+00 | - | - | - | |||
| 28 |
TPM1+G
|
RANK | 28 | - | - | - | |
| Weight | 0.0000 | - | - | - | |||
| RF | 74 | - | - | - | |||
| AVG Distance | 1.1344e+00 | - | - | - | |||
| Distance VAR | 0.0000e+00 | - | - | - | |||
| 29 |
TPM1uf+G
|
RANK | 29 | - | - | - | |
| Weight | 0.0000 | - | - | - | |||
| RF | 76 | - | - | - | |||
| AVG Distance | 1.1547e+00 | - | - | - | |||
| Distance VAR | 0.0000e+00 | - | - | - | |||
| 30 |
TPM3+G
|
RANK | 30 | - | - | - | |
| Weight | 0.0000 | - | - | - | |||
| RF | 76 | - | - | - | |||
| AVG Distance | 1.1304e+00 | - | - | - | |||
| Distance VAR | 0.0000e+00 | - | - | - | |||
| 31 |
TIM2+G
|
RANK | 31 | - | - | - | |
| Weight | 0.0000 | - | - | - | |||
| RF | 76 | - | - | - | |||
| AVG Distance | 2.1387e+00 | - | - | - | |||
| Distance VAR | 0.0000e+00 | - | - | - | |||
| 32 |
HKY+G
|
RANK | 32 | - | - | - | |
| Weight | 0.0000 | - | - | - | |||
| RF | 78 | - | - | - | |||
| AVG Distance | 1.0926e+00 | - | - | - | |||
| Distance VAR | 0.0000e+00 | - | - | - | |||
| 33 |
TPM2uf+G
|
RANK | 33 | - | - | - | |
| Weight | 0.0000 | - | - | - | |||
| RF | 78 | - | - | - | |||
| AVG Distance | 1.1273e+00 | - | - | - | |||
| Distance VAR | 0.0000e+00 | - | - | - | |||
| 34 |
TPM3uf+G
|
RANK | 34 | - | - | - | |
| Weight | 0.0000 | - | - | - | |||
| RF | 78 | - | - | - | |||
| AVG Distance | 1.1629e+00 | - | - | - | |||
| Distance VAR | 0.0000e+00 | - | - | - | |||
| 35 |
K80+G
|
RANK | 35 | - | - | - | |
| Weight | 0.0000 | - | - | - | |||
| RF | 80 | - | - | - | |||
| AVG Distance | 3.7696e+00 | - | - | - | |||
| Distance VAR | 0.0000e+00 | - | - | - | |||
| 36 |
TIM3+G
|
RANK | 36 | - | - | - | |
| Weight | 0.0000 | - | - | - | |||
| RF | 82 | - | - | - | |||
| AVG Distance | 1.2044e+00 | - | - | - | |||
| Distance VAR | 0.0000e+00 | - | - | - | |||
| 37 |
HKY
|
RANK | 37 | - | - | - | |
| Weight | 0.0000 | - | - | - | |||
| RF | 84 | - | - | - | |||
| AVG Distance | 3.3530e+00 | - | - | - | |||
| Distance VAR | 0.0000e+00 | - | - | - | |||
| 38 |
TrN+G
|
RANK | 38 | - | - | - | |
| Weight | 0.0000 | - | - | - | |||
| RF | 84 | - | - | - | |||
| AVG Distance | 1.2162e+00 | - | - | - | |||
| Distance VAR | 0.0000e+00 | - | - | - | |||
| 39 |
TIM1
|
RANK | 39 | - | - | - | |
| Weight | 0.0000 | - | - | - | |||
| RF | 84 | - | - | - | |||
| AVG Distance | 3.3410e+00 | - | - | - | |||
| Distance VAR | 0.0000e+00 | - | - | - | |||
| 40 |
TIM1+G
|
RANK | 40 | - | - | - | |
| Weight | 0.0000 | - | - | - | |||
| RF | 84 | - | - | - | |||
| AVG Distance | 1.1980e+00 | - | - | - | |||
| Distance VAR | 0.0000e+00 | - | - | - | |||
| 41 |
TIM3
|
RANK | 41 | - | - | - | |
| Weight | 0.0000 | - | - | - | |||
| RF | 84 | - | - | - | |||
| AVG Distance | 3.0322e+00 | - | - | - | |||
| Distance VAR | 0.0000e+00 | - | - | - | |||
| 42 |
TVMef+G
|
RANK | 42 | - | - | - | |
| Weight | 0.0000 | - | - | - | |||
| RF | 84 | - | - | - | |||
| AVG Distance | 2.1120e+00 | - | - | - | |||
| Distance VAR | 0.0000e+00 | - | - | - | |||
| 43 |
F81+I+G
|
RANK | 43 | - | - | - | |
| Weight | 0.0000 | - | - | - | |||
| RF | 86 | - | - | - | |||
| AVG Distance | 1.2711e+00 | - | - | - | |||
| Distance VAR | 0.0000e+00 | - | - | - | |||
| 44 |
TPM3uf
|
RANK | 44 | - | - | - | |
| Weight | 0.0000 | - | - | - | |||
| RF | 86 | - | - | - | |||
| AVG Distance | 3.3339e+00 | - | - | - | |||
| Distance VAR | 0.0000e+00 | - | - | - | |||
| 45 |
TIM2
|
RANK | 45 | - | - | - | |
| Weight | 0.0000 | - | - | - | |||
| RF | 86 | - | - | - | |||
| AVG Distance | 3.3323e+00 | - | - | - | |||
| Distance VAR | 0.0000e+00 | - | - | - | |||
| 46 |
TPM1uf
|
RANK | 46 | - | - | - | |
| Weight | 0.0000 | - | - | - | |||
| RF | 88 | - | - | - | |||
| AVG Distance | 3.3345e+00 | - | - | - | |||
| Distance VAR | 0.0000e+00 | - | - | - | |||
| 47 |
TPM2uf
|
RANK | 47 | - | - | - | |
| Weight | 0.0000 | - | - | - | |||
| RF | 88 | - | - | - | |||
| AVG Distance | 3.3494e+00 | - | - | - | |||
| Distance VAR | 0.0000e+00 | - | - | - | |||
| 48 |
GTR
|
RANK | 48 | - | - | - | |
| Weight | 0.0000 | - | - | - | |||
| RF | 88 | - | - | - | |||
| AVG Distance | 3.0411e+00 | - | - | - | |||
| Distance VAR | 0.0000e+00 | - | - | - | |||
| 49 |
GTR+I
|
RANK | 49 | - | - | - | |
| Weight | 0.0000 | - | - | - | |||
| RF | 88 | - | - | - | |||
| AVG Distance | 3.8874e+00 | - | - | - | |||
| Distance VAR | 0.0000e+00 | - | - | - | |||
| 50 |
JC+I+G
|
RANK | 50 | - | - | - | |
| Weight | 0.0000 | - | - | - | |||
| RF | 90 | - | - | - | |||
| AVG Distance | 4.9861e+00 | - | - | - | |||
| Distance VAR | 0.0000e+00 | - | - | - | |||
| 51 |
TrN
|
RANK | 51 | - | - | - | |
| Weight | 0.0000 | - | - | - | |||
| RF | 96 | - | - | - | |||
| AVG Distance | 3.3399e+00 | - | - | - | |||
| Distance VAR | 0.0000e+00 | - | - | - | |||
| 52 |
K80+I
|
RANK | 52 | - | - | - | |
| Weight | 0.0000 | - | - | - | |||
| RF | 98 | - | - | - | |||
| AVG Distance | 3.9307e+00 | - | - | - | |||
| Distance VAR | 0.0000e+00 | - | - | - | |||
| 53 |
TPM1+I TPM3+I TVMef+I
|
RANK | 53 | - | - | - | |
| Weight | 0.0000 | - | - | - | |||
| RF | 98 | - | - | - | |||
| AVG Distance | 3.9171e+00 | - | - | - | |||
| Distance VAR | 8.8647e-05 | - | - | - | |||
| 54 |
JC+G
|
RANK | 54 | - | - | - | |
| Weight | 0.0000 | - | - | - | |||
| RF | 100 | - | - | - | |||
| AVG Distance | 4.1572e+00 | - | - | - | |||
| Distance VAR | 0.0000e+00 | - | - | - | |||
| 55 |
TrNef+I
|
RANK | 55 | - | - | - | |
| Weight | 0.0000 | - | - | - | |||
| RF | 100 | - | - | - | |||
| AVG Distance | 3.9312e+00 | - | - | - | |||
| Distance VAR | 0.0000e+00 | - | - | - | |||
| 56 |
TPM2+I
|
RANK | 56 | - | - | - | |
| Weight | 0.0000 | - | - | - | |||
| RF | 100 | - | - | - | |||
| AVG Distance | 3.9126e+00 | - | - | - | |||
| Distance VAR | 0.0000e+00 | - | - | - | |||
| 57 |
TVM
|
RANK | 57 | - | - | - | |
| Weight | 0.0000 | - | - | - | |||
| RF | 100 | - | - | - | |||
| AVG Distance | 3.3415e+00 | - | - | - | |||
| Distance VAR | 0.0000e+00 | - | - | - | |||
| 58 |
TrN+I TVM+I
|
RANK | 58 | - | - | - | |
| Weight | 0.0000 | - | - | - | |||
| RF | 102 | - | - | - | |||
| AVG Distance | 3.9312e+00 | - | - | - | |||
| Distance VAR | 6.5264e-07 | - | - | - | |||
| 59 |
SYM
|
RANK | 59 | - | - | - | |
| Weight | 0.0000 | - | - | - | |||
| RF | 102 | - | - | - | |||
| AVG Distance | 3.8948e+00 | - | - | - | |||
| Distance VAR | 0.0000e+00 | - | - | - | |||
| 60 |
TPM1uf+I TPM3uf+I
|
RANK | 60 | - | - | - | |
| Weight | 0.0000 | - | - | - | |||
| RF | 104 | - | - | - | |||
| AVG Distance | 3.9368e+00 | - | - | - | |||
| Distance VAR | 9.4322e-10 | - | - | - | |||
| 61 |
TPM2
|
RANK | 61 | - | - | - | |
| Weight | 0.0000 | - | - | - | |||
| RF | 104 | - | - | - | |||
| AVG Distance | 3.4449e+00 | - | - | - | |||
| Distance VAR | 0.0000e+00 | - | - | - | |||
| 62 |
JC+I
|
RANK | 62 | - | - | - | |
| Weight | 0.0000 | - | - | - | |||
| RF | 106 | - | - | - | |||
| AVG Distance | 3.5566e+00 | - | - | - | |||
| Distance VAR | 0.0000e+00 | - | - | - | |||
| 63 |
TPM2uf+I
|
RANK | 63 | - | - | - | |
| Weight | 0.0000 | - | - | - | |||
| RF | 106 | - | - | - | |||
| AVG Distance | 3.9297e+00 | - | - | - | |||
| Distance VAR | 0.0000e+00 | - | - | - | |||
| 64 |
SYM+I
|
RANK | 64 | - | - | - | |
| Weight | 0.0000 | - | - | - | |||
| RF | 106 | - | - | - | |||
| AVG Distance | 3.9413e+00 | - | - | - | |||
| Distance VAR | 0.0000e+00 | - | - | - | |||
| 65 |
TPM3
|
RANK | 65 | - | - | - | |
| Weight | 0.0000 | - | - | - | |||
| RF | 108 | - | - | - | |||
| AVG Distance | 3.0984e+00 | - | - | - | |||
| Distance VAR | 0.0000e+00 | - | - | - | |||
| 66 |
TIM1ef+I
|
RANK | 66 | - | - | - | |
| Weight | 0.0000 | - | - | - | |||
| RF | 108 | - | - | - | |||
| AVG Distance | 3.2548e+00 | - | - | - | |||
| Distance VAR | 0.0000e+00 | - | - | - | |||
| 67 |
TIM2ef+I TIM3ef+I
|
RANK | 67 | - | - | - | |
| Weight | 0.0000 | - | - | - | |||
| RF | 108 | - | - | - | |||
| AVG Distance | 3.9227e+00 | - | - | - | |||
| Distance VAR | 1.2698e-04 | - | - | - | |||
| 68 |
F81+I
|
RANK | 68 | - | - | - | |
| Weight | 0.0000 | - | - | - | |||
| RF | 110 | - | - | - | |||
| AVG Distance | 3.8863e+00 | - | - | - | |||
| Distance VAR | 0.0000e+00 | - | - | - | |||
| 69 |
TPM1
|
RANK | 69 | - | - | - | |
| Weight | 0.0000 | - | - | - | |||
| RF | 110 | - | - | - | |||
| AVG Distance | 3.3355e+00 | - | - | - | |||
| Distance VAR | 0.0000e+00 | - | - | - | |||
| 70 |
HKY+I
|
RANK | 70 | - | - | - | |
| Weight | 0.0000 | - | - | - | |||
| RF | 112 | - | - | - | |||
| AVG Distance | 3.9144e+00 | - | - | - | |||
| Distance VAR | 0.0000e+00 | - | - | - | |||
| 71 |
TIM1+I TIM3+I
|
RANK | 71 | - | - | - | |
| Weight | 0.0000 | - | - | - | |||
| RF | 112 | - | - | - | |||
| AVG Distance | 3.9158e+00 | - | - | - | |||
| Distance VAR | 5.4308e-10 | - | - | - | |||
| 72 |
TIM2+I
|
RANK | 72 | - | - | - | |
| Weight | 0.0000 | - | - | - | |||
| RF | 114 | - | - | - | |||
| AVG Distance | 3.9149e+00 | - | - | - | |||
| Distance VAR | 0.0000e+00 | - | - | - | |||
| 73 |
TIM3ef
|
RANK | 73 | - | - | - | |
| Weight | 0.0000 | - | - | - | |||
| RF | 114 | - | - | - | |||
| AVG Distance | 3.3167e+00 | - | - | - | |||
| Distance VAR | 0.0000e+00 | - | - | - | |||
| 74 |
F81+G
|
RANK | 74 | - | - | - | |
| Weight | 0.0000 | - | - | - | |||
| RF | 116 | - | - | - | |||
| AVG Distance | 3.4662e+00 | - | - | - | |||
| Distance VAR | 0.0000e+00 | - | - | - | |||
| 75 |
K80
|
RANK | 75 | - | - | - | |
| Weight | 0.0000 | - | - | - | |||
| RF | 116 | - | - | - | |||
| AVG Distance | 3.3354e+00 | - | - | - | |||
| Distance VAR | 0.0000e+00 | - | - | - | |||
| 76 |
TIM1ef TIM2ef
|
RANK | 76 | - | - | - | |
| Weight | 0.0000 | - | - | - | |||
| RF | 118 | - | - | - | |||
| AVG Distance | 3.3525e+00 | - | - | - | |||
| Distance VAR | 1.3370e-03 | - | - | - | |||
| 77 |
F81
|
RANK | 77 | - | - | - | |
| Weight | 0.0000 | - | - | - | |||
| RF | 120 | - | - | - | |||
| AVG Distance | 3.4437e+00 | - | - | - | |||
| Distance VAR | 0.0000e+00 | - | - | - | |||
| 78 |
TrNef
|
RANK | 78 | - | - | - | |
| Weight | 0.0000 | - | - | - | |||
| RF | 120 | - | - | - | |||
| AVG Distance | 3.8922e+00 | - | - | - | |||
| Distance VAR | 0.0000e+00 | - | - | - | |||
| 79 |
TVMef
|
RANK | 79 | - | - | - | |
| Weight | 0.0000 | - | - | - | |||
| RF | 120 | - | - | - | |||
| AVG Distance | 3.8917e+00 | - | - | - | |||
| Distance VAR | 0.0000e+00 | - | - | - | |||
| 80 |
JC
|
RANK | 80 | - | - | - | |
| Weight | 0.0000 | - | - | - | |||
| RF | 126 | - | - | - | |||
| AVG Distance | 3.4899e+00 | - | - | - | |||
| Distance VAR | 0.0000e+00 | - | - | - |
AIC Selection Results
Model selected
| Model | TVM+I+G | ||
|---|---|---|---|
| partition | 012314 | ||
| -lnL | 54664.1307 | ||
| K | 773 | ||
| freqA | 0.2282 | R(a) | 1.2610 |
| freqC | 0.2495 | R(b) | 6.9388 |
| freqG | 0.2400 | R(c) | 1.1157 |
| freqT | 0.2824 | R(d) | 1.4474 |
| ti/tv | - | R(e) | 6.9388 |
| R(f) | 1.0000 | ||
| p-inv | 0.1200 | gamma | 0.8280 |
Best model tree
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9660:0.00665480):0.01331236,((Exsudoporus_frostii:0.01800348,((Butyriboletus_subsplendidus:0.00000004,Boletus_sp_HKAS_52661:0.00000001):0.02628495,((Boletus_roseopurpureus:0.01726189,(Butyriboletus_pseudospeciosus:0.00000003,Boletus_aff_speciosus_HKAS_59467:0.00000001):0.02874402):0.02729681,((Boletus_pulchriceps:0.05465738,Butyriboletus_appendiculatus:0.00936466):0.00073862,(Boletus_sp_HKAS_63528:0.00592921,(Butyriboletus_pseudoregius:0.00895251,(Boletus_sp_HKAS_55413:0.01681181,Butyriboletus_roseoflavus:0.01187852):0.00000003):0.00460509):0.00000016):0.00844720):0.00457280):0.00669875):0.01230898,(((Boletus_sp_HKAS_57774:0.02956840,(Boletus_sp_HKAS_59814:0.06188065,Boletus_sp_HKAS_52525:0.01967073):0.01863100):0.00539211,((Singerocomus_inundabilis:0.01631011,Singerocomus_rubriflavus:0.01298490):0.08787516,(Boletus_sp_HKAS_55373:0.09197170,((Rugiboletus_brunneiporus:0.00000007,Leccinum_aff_extremiorientale_HKAS_68586:0.00000001):0.01804898,(Leccinum_extremiorientale:0.00363932,(Retiboletus_kauffmanii:0.00000001,Rugiboletus_extremiorientalis:0.00117881):0.00226310):0.01623480):0.04302571):0.02020184):0.00378967):0.00474204,((((Boletus_sp_HKAS_74864:0.03120077,(Boletus_sp_HKAS_53353:0.04603537,(Boletus_aff_calopus_HKAS_74739:0.02619456,(Caloboletus_xiangtoushanensis:0.02522668,Boletus_sp_HKAS_55444:0.00659702):0.00427429):0.00405236):0.00367230):0.00952289,(Rubroboletus_sinicus:0.01781055,(Rubroboletus_latisporus:0.01182540,Boletus_sp_HKAS_68679:0.00491793):0.01217510):0.00915190):0.00517542,((Suillellus_amygdalinus:0.01355867,(Suillellus_subamygdalinus:0.00120554,Suillellus_aff_amygdalinus_HKAS_57262:0.00116234):0.00855144):0.00660896,(Xerocomus_aff_macrobbii_HKAS_56280:0.07182455,((Pulveroboletus_sp_HKAS_57665:0.00736294,(Pulveroboletus_macrosporus:0.00000009,Pulveroboletus_sp_HKAS_58860:0.00247148):0.00358794):0.01723906,((Pulveroboletus_sp_HKAS_52615:0.00000007,Pulveroboletus_sp_HKAS_74933:0.00000001):0.04778272,(Pulveroboletus_aff_ravenelii:0.00000001,Pulveroboletus_aff_ravenelii_HKAS_53351:0.00123629):0.01654233):0.01490732):0.04147941):0.01256274):0.00976639):0.00000005,((Crocinoboletus_laetissimus:0.02717184,Crocinoboletus_rufoaureus:0.01659980):0.04471839,((Sutorius_sp_HKAS_58724:0.00000007,Sutorius_sp_HKAS_59443:0.00132238):0.02861208,((((Neoboletus_venenatus:0.00000007,Boletus_sp_HKAS_57489:0.00000001):0.03985738,(Boletus_sp_HKAS_76660:0.04915380,Boletus_sp_HKAS_50351:0.03310352):0.01198085):0.00684586,((Neoboletus_sanguineus:0.00000001,Boletus_sp_HKAS_68587:0.00000007):0.00956916,(((Neoboletus_brunneissimus:0.00401654,Boletus_sinensis:0.01786745):0.01413779,((Neoboletus_hainanensis:0.00114411,Boletus_sp_HKAS_59469:0.00122066):0.02314591,(Sutorius_ferrugineus:0.01512135,(Neoboletus_tomentulosus:0.00119161,Boletus_sp_HKAS_53369:0.00000001):0.03541225):0.00803617):0.00301924):0.00467710,(Gastroboletus_sp_HKAS_57093:0.01464746,(Neoboletus_magnificus:0.02761225,(Neoboletus_rubriporus:0.00729364,Boletus_sp_HKAS_57512:0.00477379):0.01287937):0.00061791):0.00122941):0.00121916):0.00000008):0.00070280,((Neoboletus_sanguineoides:0.00000004,Boletus_aff_erythropus_HKAS_55440:0.00000001):0.02350580,(Neoboletus_obscureumbrinus:0.02565105,(Costatisporus_cyanescens:0.04861282,(Sutorius_aff_eximius_HKAS_56291:0.00571564,(Sutorius_aff_eximius_HKAS_52672:0.00118974,Sutorius_eximius:0.00000004):0.00678144):0.06918478):0.02291892):0.00485441):0.00465759):0.00000010):0.01645570):0.00000005):0.00122295):0.00000004):0.00084953):0.01060399):0.00289399):0.00132354):0.00000043):0.03943019):0.05903989):0.04420967):0.22733659):0.31314077);
Display best model tree in PhyloWidget
| Model | -lnL | K | AIC | delta | weight | cumWeight |
|---|---|---|---|---|---|---|
| TVM+I+G | 54664.1307 | 773 | 110874.2613 | 0.0000 | 0.6595 | 0.6595 |
| TPM3uf+I+G | 54667.2466 | 771 | 110876.4933 | 2.2319 | 0.2161 | 0.8756 |
| GTR+I+G | 54665.1162 | 774 | 110878.2324 | 3.9711 | 0.0906 | 0.9661 |
| TIM3+I+G | 54668.1007 | 772 | 110880.2014 | 5.9401 | 0.0338 | 1.0000 |
| TPM1uf+I+G | 54677.0807 | 771 | 110896.1614 | 21.9000 | 0.0000 | 1.0000 |
| TIM1+I+G | 54676.1237 | 772 | 110896.2474 | 21.9860 | 0.0000 | 1.0000 |
| HKY+I+G | 54681.0749 | 770 | 110902.1499 | 27.8885 | 0.0000 | 1.0000 |
| TrN+I+G | 54680.1921 | 771 | 110902.3841 | 28.1228 | 0.0000 | 1.0000 |
| TPM2uf+I+G | 54681.0301 | 771 | 110904.0601 | 29.7988 | 0.0000 | 1.0000 |
| TIM2+I+G | 54680.8380 | 772 | 110905.6759 | 31.4146 | 0.0000 | 1.0000 |
| SYM+I+G | 54684.4868 | 771 | 110910.9736 | 36.7123 | 0.0000 | 1.0000 |
| TIM3ef+I+G | 54689.0569 | 769 | 110916.1137 | 41.8524 | 0.0000 | 1.0000 |
| TIM1ef+I+G | 54690.6822 | 769 | 110919.3644 | 45.1030 | 0.0000 | 1.0000 |
| TrNef+I+G | 54693.9431 | 768 | 110923.8861 | 49.6248 | 0.0000 | 1.0000 |
| TIM2ef+I+G | 54693.2192 | 769 | 110924.4383 | 50.1770 | 0.0000 | 1.0000 |
| TVMef+I+G | 54697.6998 | 770 | 110935.3995 | 61.1382 | 0.0000 | 1.0000 |
| TPM3+I+G | 54701.8754 | 768 | 110939.7507 | 65.4894 | 0.0000 | 1.0000 |
| TPM1+I+G | 54705.6954 | 768 | 110947.3909 | 73.1295 | 0.0000 | 1.0000 |
| TPM2+I+G | 54706.8459 | 768 | 110949.6918 | 75.4305 | 0.0000 | 1.0000 |
| K80+I+G | 54709.2741 | 767 | 110952.5482 | 78.2869 | 0.0000 | 1.0000 |
| TVM+G | 54709.0179 | 772 | 110962.0358 | 87.7744 | 0.0000 | 1.0000 |
| GTR+G | 54713.0974 | 773 | 110972.1949 | 97.9335 | 0.0000 | 1.0000 |
| TIM3+G | 54717.0413 | 771 | 110976.0826 | 101.8213 | 0.0000 | 1.0000 |
| TPM3uf+G | 54719.7240 | 770 | 110979.4480 | 105.1867 | 0.0000 | 1.0000 |
| TIM1+G | 54722.3836 | 771 | 110986.7672 | 112.5059 | 0.0000 | 1.0000 |
| SYM+G | 54723.6545 | 770 | 110987.3089 | 113.0476 | 0.0000 | 1.0000 |
| TPM1uf+G | 54725.4826 | 770 | 110990.9652 | 116.7039 | 0.0000 | 1.0000 |
| TIM1ef+G | 54727.8087 | 768 | 110991.6174 | 117.3560 | 0.0000 | 1.0000 |
| TPM2uf+G | 54726.7532 | 770 | 110993.5065 | 119.2451 | 0.0000 | 1.0000 |
| TrN+G | 54727.1627 | 770 | 110994.3253 | 120.0640 | 0.0000 | 1.0000 |
| TIM3ef+G | 54729.9199 | 768 | 110995.8397 | 121.5784 | 0.0000 | 1.0000 |
| HKY+G | 54729.8777 | 769 | 110997.7554 | 123.4940 | 0.0000 | 1.0000 |
| TrNef+G | 54731.9025 | 767 | 110997.8049 | 123.5436 | 0.0000 | 1.0000 |
| TIM2+G | 54728.8160 | 771 | 110999.6321 | 125.3707 | 0.0000 | 1.0000 |
| TIM2ef+G | 54732.2772 | 768 | 111000.5544 | 126.2931 | 0.0000 | 1.0000 |
| TVMef+G | 54737.6815 | 769 | 111013.3630 | 139.1017 | 0.0000 | 1.0000 |
| TPM3+G | 54743.2877 | 767 | 111020.5754 | 146.3140 | 0.0000 | 1.0000 |
| TPM1+G | 54744.6229 | 767 | 111023.2458 | 148.9844 | 0.0000 | 1.0000 |
| TPM2+G | 54745.4575 | 767 | 111024.9150 | 150.6536 | 0.0000 | 1.0000 |
| K80+G | 54751.9912 | 766 | 111035.9823 | 161.7210 | 0.0000 | 1.0000 |
| F81+I+G | 58161.8459 | 769 | 117861.6917 | 6987.4304 | 0.0000 | 1.0000 |
| F81+G | 58205.3078 | 768 | 117946.6157 | 7072.3543 | 0.0000 | 1.0000 |
| GTR+I | 58273.9769 | 773 | 118093.9538 | 7219.6924 | 0.0000 | 1.0000 |
| SYM+I | 58282.9166 | 770 | 118105.8331 | 7231.5718 | 0.0000 | 1.0000 |
| TIM2+I | 58284.5077 | 771 | 118111.0154 | 7236.7541 | 0.0000 | 1.0000 |
| TVM+I | 58283.8420 | 772 | 118111.6840 | 7237.4227 | 0.0000 | 1.0000 |
| TIM1+I | 58284.9451 | 771 | 118111.8902 | 7237.6288 | 0.0000 | 1.0000 |
| TIM1ef+I | 58288.0698 | 768 | 118112.1395 | 7237.8782 | 0.0000 | 1.0000 |
| TIM2ef+I | 58288.4129 | 768 | 118112.8258 | 7238.5645 | 0.0000 | 1.0000 |
| JC+I+G | 58290.6876 | 766 | 118113.3752 | 7239.1139 | 0.0000 | 1.0000 |
| TIM3+I | 58286.7774 | 771 | 118115.5547 | 7241.2934 | 0.0000 | 1.0000 |
| TrN+I | 58287.7823 | 770 | 118115.5646 | 7241.3033 | 0.0000 | 1.0000 |
| TrNef+I | 58290.9223 | 767 | 118115.8445 | 7241.5832 | 0.0000 | 1.0000 |
| TIM3ef+I | 58290.2556 | 768 | 118116.5111 | 7242.2498 | 0.0000 | 1.0000 |
| TPM2uf+I | 58289.9389 | 770 | 118119.8777 | 7245.6164 | 0.0000 | 1.0000 |
| TPM1uf+I | 58290.0755 | 770 | 118120.1511 | 7245.8897 | 0.0000 | 1.0000 |
| TPM3uf+I | 58291.8448 | 770 | 118123.6896 | 7249.4283 | 0.0000 | 1.0000 |
| HKY+I | 58295.0934 | 769 | 118128.1868 | 7253.9255 | 0.0000 | 1.0000 |
| TVMef+I | 58318.3679 | 769 | 118174.7358 | 7300.4745 | 0.0000 | 1.0000 |
| TPM1+I | 58323.4294 | 767 | 118180.8587 | 7306.5974 | 0.0000 | 1.0000 |
| TPM2+I | 58323.7207 | 767 | 118181.4413 | 7307.1800 | 0.0000 | 1.0000 |
| TPM3+I | 58325.5156 | 767 | 118185.0313 | 7310.7699 | 0.0000 | 1.0000 |
| K80+I | 58327.4127 | 766 | 118186.8254 | 7312.5640 | 0.0000 | 1.0000 |
| JC+G | 58331.7679 | 765 | 118193.5357 | 7319.2744 | 0.0000 | 1.0000 |
| GTR | 60068.1020 | 772 | 121680.2039 | 10805.9426 | 0.0000 | 1.0000 |
| TIM2 | 60076.5324 | 770 | 121693.0649 | 10818.8035 | 0.0000 | 1.0000 |
| TIM3 | 60079.1970 | 770 | 121698.3940 | 10824.1327 | 0.0000 | 1.0000 |
| SYM | 60080.8800 | 769 | 121699.7600 | 10825.4987 | 0.0000 | 1.0000 |
| TIM1 | 60080.1545 | 770 | 121700.3090 | 10826.0477 | 0.0000 | 1.0000 |
| TIM1ef | 60086.5332 | 767 | 121707.0664 | 10832.8051 | 0.0000 | 1.0000 |
| TIM2ef | 60086.6466 | 767 | 121707.2931 | 10833.0318 | 0.0000 | 1.0000 |
| TrN | 60085.4473 | 769 | 121708.8946 | 10834.6332 | 0.0000 | 1.0000 |
| TIM3ef | 60087.5183 | 767 | 121709.0366 | 10834.7752 | 0.0000 | 1.0000 |
| TrNef | 60091.3522 | 766 | 121714.7044 | 10840.4431 | 0.0000 | 1.0000 |
| TVM | 60114.1525 | 771 | 121770.3051 | 10896.0437 | 0.0000 | 1.0000 |
| TPM2uf | 60120.6159 | 769 | 121779.2318 | 10904.9705 | 0.0000 | 1.0000 |
| TPM3uf | 60121.0716 | 769 | 121780.1431 | 10905.8818 | 0.0000 | 1.0000 |
| TPM1uf | 60121.9592 | 769 | 121781.9185 | 10907.6571 | 0.0000 | 1.0000 |
| HKY | 60126.0413 | 768 | 121788.0827 | 10913.8213 | 0.0000 | 1.0000 |
| TVMef | 60176.9305 | 768 | 121889.8610 | 11015.5997 | 0.0000 | 1.0000 |
| TPM1 | 60181.6769 | 766 | 121895.3539 | 11021.0925 | 0.0000 | 1.0000 |
| TPM2 | 60182.6328 | 766 | 121897.2656 | 11023.0043 | 0.0000 | 1.0000 |
| TPM3 | 60183.4189 | 766 | 121898.8377 | 11024.5764 | 0.0000 | 1.0000 |
| K80 | 60184.9661 | 765 | 121899.9322 | 11025.6708 | 0.0000 | 1.0000 |
| F81+I | 61621.3494 | 768 | 124778.6988 | 13904.4375 | 0.0000 | 1.0000 |
| JC+I | 61717.3110 | 765 | 124964.6220 | 14090.3607 | 0.0000 | 1.0000 |
| F81 | 63444.6157 | 767 | 128423.2314 | 17548.9700 | 0.0000 | 1.0000 |
| JC | 63514.5239 | 764 | 128557.0478 | 17682.7865 | 0.0000 | 1.0000 |
| -lnL: | negative log likelihod |
| K: | number of estimated parameters |
| AIC: | Akaike Information Criterion |
| delta: | AIC difference |
| weight: | AIC weight |
| cumWeight: | cumulative AIC weight |
Confidence interval
There are 88 models in the 100.00% confidence interval:
TVM+I+G TPM3uf+I+G GTR+I+G TIM3+I+G TPM1uf+I+G TIM1+I+G HKY+I+G TrN+I+G TPM2uf+I+G TIM2+I+G SYM+I+G TIM3ef+I+G TIM1ef+I+G TrNef+I+G TIM2ef+I+G TVMef+I+G TPM3+I+G TPM1+I+G TPM2+I+G K80+I+G TVM+G GTR+G TIM3+G TPM3uf+G TIM1+G SYM+G TPM1uf+G TIM1ef+G TPM2uf+G TrN+G TIM3ef+G HKY+G TrNef+G TIM2+G TIM2ef+G TVMef+G TPM3+G TPM1+G TPM2+G K80+G F81+I+G F81+G GTR+I SYM+I TIM2+I TVM+I TIM1+I TIM1ef+I TIM2ef+I JC+I+G TIM3+I TrN+I TrNef+I TIM3ef+I TPM2uf+I TPM1uf+I TPM3uf+I HKY+I TVMef+I TPM1+I TPM2+I TPM3+I K80+I JC+G GTR TIM2 TIM3 SYM TIM1 TIM1ef TIM2ef TrN TIM3ef TrNef TVM TPM2uf TPM3uf TPM1uf HKY TVMef TPM1 TPM2 TPM3 K80 F81+I JC+I F81 JC
PAUP block
--
PAUP* Commands Block:
If you want to load the selected model and associated estimates in PAUP*,
attach the next block of commands after the data in your PAUP file:
[!
Likelihood settings from best-fit model (TVM+I+G) selected by AIC
with jModeltest 2.1.10 v20160303 on Sun Jan 05 14:05:16 PST 2020]
BEGIN PAUP;
Lset base=(0.2282 0.2495 0.2400 ) nst=6 rmat=(1.2610 6.9388 1.1157 1.4474 6.9388) rates=gamma shape=0.8280 ncat=4 pinvar=0.1200;
END;
--
Model Averaged Phylogeny
| Selection criterion | AIC |
|---|---|
| Confidence interval | 100.00% |
| Consensus type | 50% majority rule |
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Display consensus tree in PhyloWidget
